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This will be a genealogical account of the Borgia family (it was a Spanish family, whose name was spelled "Borja" in Spanish). The part of the family of which my materials treat begins with the marriage of two distant cousins: Jofre de Borja y Doms (d.ca 1437) and Isabel de Borja, dau.of Domingo de Borja, and sister of Alonso de Borja, who became in 1455 Pope Calixtus III. Jofre and Isabel had issue:
1.Pedro Luis de Borja, Duca di Spoleto, di Benevento e di Terracina, Gov of St.Peters, Prefect of Rome, d.Civitavecchia 1458
2.Rodrigo de Borja, reigned as Pope Alexander VI 1492-1503, during which time he set up all his relatives in powerful appanages and marriages, b.1431, d.of poisoning 1503; he had many illegitimate kids:
2.1.Pedro Luis, Duque de Gandia, b.ca 1467, d.1488; m. Maria Enriquez de Luna (of a bastard branch of the Castilian royal family) (ca 1474-1539)
2.2.Jirolama, b.ca 1469, d.1483; m.ca 1482 Gianandrea Cesarini (d.1483)
2.3.[by Vanozza Cattaneis (d.Rome 1518)] Cesare Borgia, Archbishop of Valencia, Cardinal; he resigned his religoius posts 1494; Duc de Valentinois, Cte de Diois, Duca d'Urbino, sovereign Pr di Piombino, b.1475, k.a.Viana 1507; m.1499 Charlotte d'Albret, Dame de Chalus (d.1514)
2.3.1.Luisa, Pss Borgia, Dss de Valentinois, etc (1500-1553); m.1st 1517 Louis de La Tremoille, Vcte de Thouars, Pr de tarente, Cte de Guines, etc (k.a.Pavia 1525); m.2d 1530 Philippe de Bourbon de Busset (k.a.St.Quentin 1557)
2.3.2.[illegitimate] Girolamo Borgia, lived inFerrara, b.ca 1501; m.1st Isabella Pizzabernani; m.2d Ctsa Isabella di Carpi
2.3.2.1.Ippolita
2.3.2.2.Lucrezia
2.3.3.[illegitimate] Lucrezia, Abbess of San Bernardino, Ferrara, d.1573
2.4.[by Vanozza Cattaneis] Juan de Borja, Duque de Gandia, Duca di Sessa, Grand Constable of Naples, papal Gonfalonier and General Captain, Gov of St.Peters, b.Rome 1474, murdered there 1497; m.ca 1492 Maria Enriquez, widow of his oldest brotehr
2.4.1.Juan de Borja, Duque de Gandia, Duca di Sessa, Pr di Teabo e Tricario, Grand Constable of Naples (1405-1543); m.1st Valladolid 1509 Juana (d.1521) illegitimate dau.of Alfonso of Aragon, Archbishop of Saragossa; m.2d ca 1523 Francisca de Castro y de Pinos (d.1576)
2.4.1.1.[St.] Francisco de Borja, Duque de Gandia, Gov and Captain General of Catalonia; after the death of his wife he became a Jesuit and rose to be General of the order; m.1510, d.Rome 1572; m.1529 Leonor de Castro y de Melo  (1512-1546); for his descendants see Part 2
2.4.1.2.Alfonso, Abbot of Santa Maria de Valldigna (1511-1531/8)
2.4.1.3.Enriquem Cardinal-Deacon, b.1518, d.Viterbo 1540
2.4.1.4.Jeronimo, d.after 27 Aug 1528
2.4.1.5.Rodrigo, Baron de Navarres, Cardinal-deacon, d.1537
2.4.1.6.Pedro Luis Galceran, Marques de Navarres, Viceroy of Catalonia (1528-1592); m.1558 Leonor de Melo y de Noronha (d.1586)
2.4.1.6.1.Juan, Marques de Navarres (1560-1588); m.Marie von Dietrichstein (1554-    )
2.4.1.6.2.[illegitimate by Mencia Jofre de Almunia] Pedro Luis de Borja (1588-    ); m.Ana de Peralta y Jofre
2.4.1.6.2.1.Pedro, d.after 10 Aug 1622
2.4.1.7.Diego, a priest, b.1529, k.a.1554; he had illegitimate kids:
2.4.1.7.1.Diego, Bp of Ales
2.4.1.7.2.Juana, an Abbess in Madrid
2.4.1.7.3.Francisca; m.1572 Pedro de Rojas y Ladron (d.1602)
2.4.1.8.Tomas, Archbishop of Saragossa (1541-1610)
2.4.1.9.Felipe Manuel, d.Messina 1587; he had an illegitimate son:
2.4.1.9.1.Felipe; m.Jeronima de Castellvi
2.4.1.10.Maria, a nun at Santa Clara, Gandia, b.1513
2.4.1.11.Ana, a nun at Santa Clara, Gandia, d.1568
2.4.1.12.Isabel, a nun at Santa Clara, Gandia, d.1568
2.4.1.13.Luisa (1520-1560); m.1541 Martin de Aragon, Duque de Villahermosa (d.1581)
2.4.1.14.Maria, a nun at Santa Clara, Gandia, d.after Aug 1569
2.4.1.15.Leonor (1534-ca 1596); m.ca 1558 Miguel de Gurrea y Moncada, sn de Guerra
2.4.1.16.Ana, a nun at Santa Clara, Gandia (1535-1601)
2.4.1.17.Magdalena Clara, Marquesa de Navarres; m.Fernando de Proxita, Cde de Almenara
2.4.1.18.Margarita (1538-1573); m.1558 Fadrique de Noronha (d.1573)
2.4.1.19.Juana, d.young
2.4.1.20.[illegitimate by Catalina Diaz y de Castellvi] Juan Cristobal de Borja, b.1516; m.1st 1545 Ana de Ribelles; m.2d Magdalena Munoz
2.4.1.20.1.Pedro; m.Isabel de Hijar y Borja
2.4.2.Isabel, a nun at Santa Clara, Gandia (1498-1557)
2.5.[by Vanozza Cattaneis] Lucrezia Borgia, b.Rome 1480, d.Ferrara 1519; m.1st Vatican 1493 (div 1497) Giovanni Sforza d'Aragona, Cte di Cotognola, Pr di Pesaro; m.2d Vatican 1498 Alfonso de Aragon, Pr di Salerno, Duca di Biseglia (murdered in the Vatican 1500); m.3d 1502 Alfonso d'Este, Duke of Ferrara, Modena and Reggio (d.1534); by her 2d m.she had a son who took the Borgia name: Rodrigo d'Aragona de Borgia, Duca di Biseglia e Sermonetta (b.Rome 1499, d.Bari 1512)
2.6.Isabella (1471-1547); m.1483 Pietro Giovanni Matuzzi 
2.7.[by Vanozza Cattaneis] Jofre Borgia, Pr di Squillace, b.1481/2, d.Squillace 1517; m.1st Naples 1494 Sancha (d.1504) an illegitimate dau.of King Alfonso II of Naples; m.2d Maria de Mila; all kids were by 2d m.
2.7.1.Francesco, Pr di Squillace, Cte di Olivito; m.1st Isabella Piccolomini; m.2d Isabella Milano d'Aragona
2.7.1.1.Gianbattista, Pr di Squillace; m.Leonora Marulli
2.7.1.1.1.Pietro Borgia d'Aragona, Pr di Squillace, d.ca 1624; m.1sr Isabella Pignatelli; m.2d Leonora Carafa; m.3d Lucrecia de Cardenas y Carafa
2.7.1.1.1.1.Anna, Pcsa de Squillace, d.1644; m.1602 Francisco de Borja, Cde de Mayalde (d.1658)
2.7.1.1.1.2.Giovanna, d.ca 1612; m.Michele Antonio Orsini, Duca di Gravina
2.7.1.2.Antonia; m.Antonio Piccolomini
2.7.2.Lucrezia, d.ca 1576; m.1525 Giovanni Carafa, Marchese di Castelvetere (d.1553)
2.7.3.Marina; m.Michele de Ayerbe de Aragon, Cte di Simari
2.8.[by Giulia Farnese, sister of Pope Paul III] Laura Orsini, b.1492; m.1508 Niccolo della Rovere, nephew of Pope Julius III
2.9.Giovanni Borgia, Duca di Nepi e di Camerino, b.1498, d.Genoa 1547
2.10.Rodrigo Borgia, Abbot of Cicciano di Nola (1503-1527)
3.Juana; m.Pedro-Guillen Lanzol de Romani, Baron de Villalonga
4.Tecla, d.ca 1462; m.Vidal de Vilanova
5.Beatriz, Bss de Castelnovo; m.Ximen Perez de Arenos
6.Damiata

End of Part 1

Part 2. St Francisco de Borja, Duque de Gandia (see Part 1) had issue:
1.Carlos, Duque de Gandia, Viceroy and Captain General of Portugal, b.Madrid 1530, d.1592; m.ca 1548 Magdalena de Centellas y Folch de Cardona, Cdsa de Oliva
1.1.Francisco Tomas, Duque de Gandia, etc (1551-1595); m.1572 Juana de Velasco y de Aragon
1.1.1.Carlos Francisco, Duque de Gandia (1573-1632); m.1593 Artemisia Doria e Carreto (d.1644)
1.1.1.1.Francisco Diego Pascual, Duque de Gandia (1596-1664); m.ca 1618 Artemisia Doria e Colonna (ca 1604-ca 1654)
1.1.1.1.1.Francisco Carlos Pascual, Duque de Gandia (1626-1665); m.ca 1645 Maria Ponce de Leon y de Aragon (d.1676)
1.1.1.1.1.1.Francisco Juan Pascual, b.1649, d.young
1.1.1.1.1.2.Pascual Francisco, Duque de Gandia (1653-1716); m.1669 Juana Ferdnandez de Cordoca y Figueroa (d.1720)
1.1.1.1.1.2.1.Francisco Pascual, Marques de Lombay, b.1672, d.young
1.1.1.1.1.2.2.Luis Ignacio, Duque de Gandia, Pr di Squillace (1673-1740); m.1694 Rosalea Bernarda de Benavides y Aragon
1.1.1.1.1.2.3.Jose Alonso (1674-1693)
1.1.1.1.1.2.4.Maria Anna, Duquesa de gandia (1676-1748); m.1st Diego de Benavides y Aragon, Marques de Solera (d.1693); m.2d 1694 Luis Francisco de Benavides y Aragon, Marques de Solera (d.1706); m.3d ca 1718 Juan Manuel de Zuniga Sotomayor y Guzman, Duque de Bejar (d.1747)
1.1.1.1.1.2.5.Ignacia Juana (1677-1711); m.1st 1695 Antonio Pimentel, Cde de Luna, Duque de Benavente; m.2d Juan Enriquez de Guzman, Cde de Alba de Lista (d.1709)
1.1.1.1.1.2.6.Maria Francisca, b.1679. d.young
1.1.1.1.1.2.7.Pia Maria, a nun in Madrid
1.1.1.1.1.2.8.Jesuella Maria, a nun in Madrid, b.1701, d.after 30 Jan 1716
1.1.1.1.1.3.Francisco Antonio, Cardinal de Borja, Archbishop of Burgos (1659-1702)
1.1.1.1.1.4.Carlos, Cardinal de Borja, Archbishop of Trapezunt, Patriarch of India (1663-1733)
1.1.1.1.1.5.Luis Melchior, Pr di Squillace, Duque de Ciudad-Real (1665-1718); m.1701 Maria Antonia Pimentel, Pcs de Squillace, Duquesa de Ciudad-Real (d.1728)
1.1.1.1.1.6.Ana Victoria (1650-1726); m.Diego Mesia Carillo, Marquez de la Guardia (d.1702)
1.1.1.1.1.7.Jesualda Maria Eugenia, a nun at Santa Clara, Gandia, bapt 1651, d.after 1676
1.1.1.1.1.8.Artemisia Maria Luisa, bapt 1657, d.1723; m.ca 1673 Felipe Spinelli, Pr di Cariati (d.1725)
1.1.1.1.1.9.Isabel, d.1729; m.1st Francisco Enriquez, Cde de Alba de Lista (d.1691); m.2d Juan Enriquez, Cde de Alba de Lista (d.1709)
1.1.1.1.2.Gasparo Francisco, a canon in Seville (1629-    )
1.1.1.1.3.Melchior Vicente, Archdeacon in Jativa (1635-ca 1670)
1.1.1.1.4.Artemisia, b.1620, d.young
1.1.1.1.5.Juana Francisca, b.1625, d.young
1.1.1.1.6.Magdalena Francisca (1627-1700); m.1642 Philippe de Ligne, Duke von Arenberg, Arschot and Croy (d.1674)
1.1.1.1.7.Zenobia Maria Andrea, b.1628, d.young
1.1.1.1.8.Maria Luisa Ana, a nun in Gandia (1632-    )
1.1.1.1.9.Constanza Andrea Maria, a nun in Gandia (1633-    )
1.1.1.1.10.Ana Jeronima Francisca, b.1639, d.young
1.1.1.1.11.Ana Francisca Hermenegilda (1640-1706); m.1st Enrique Pimentel, Marques de Tavora; m.2d 1664 Pedro de Castro de Portugal, Duca di Taurisano (d.1672)
1.1.1.1.12.Vicenta, a nun at Santa Clara, Gandia
1.1.2.Inigo (1575-1622); m.Helene de Henin
1.1.2.1.Gaspar, b.1612, k.a.1635
1.1.2.2.Francisco, a canon in Toledo
1.1.2.3.Juana, d.1661; m.1st Juan de Vega, Cde de la Villa de Grajal de Campos (d.1648); m.2d Luis Francisco de Guzman, Marques de Montealegre
1.1.2.4.Maria Teresa; m.1st Gaspar Antonio de Alvarado, Cde de Villamor; m.2d Fernando Miguel de Tejada y Mendoza (d.1675)
1.1.2.5.Ana Clara, d.young
1.1.3.Gaspar, Cardinal de Borja, Captain-General of Naples, Archbishop of Seville and Toledo, Primate of Spain (1580-1645)
1.1.4.Baltasar, Bp of Majorca (1586-1630)
1.1.5.Melchor Francisco, Captain-General of Spain (1587-ca 1645)
1.1.6.Juan,b 1588, d.after 29 Nov 1604
1.1.7.Catalina, a nun at Santa Clara, Gandia (1583-    )
1.1.8.Magdalena; m.1594 Inigo Fernandez de Velasco, Cde de Haro
1.1.9.[illegitimate]Rodrigo, Archdeacon of Murviedo, a Franciscan
1.1.10.[illegitimate]Justa, a nun at Santa Clara, Gandia
1.2.Pedro, d.1629; m.ca 1577 Leonor de Borja (d.1613)
1.3.Luis, k.a.
1.4.Alfonso Mateo, Archdeacon of Aleira, d.1606
1.5.Isabel, Abbess of Oliva, b.1558/9
1.6.Ana, an abbess in Madrid
1.7.Magdalena, a nun in Oliva
2.Juan, Cde de Mayalde y de Ficalho, a diplomat sent to Portugal anfd Germany; Viceroy of Portugal (1533-1606); m.1st ca 1552 Lorenza de Onaz y Loyola (d.1575); m.2d 1576 Francisca de Aragon y Barreto, Cdsa de Ficalho y Mayalde (d.1615)
[by 1st m.]:
2.1.Leonor, sna de Onaz, d.1613; m.ca 1577 Pedro de Borja
2.2.Magdalena, sna de Onaz, d.1626; m.1587 Juan Urban de Vivero, Cde de Fuensaldanha (d.1610)
2.3.Francisca, a nun in Madrid
2.4.Juana, a nun
[by 2d m.]:
2.5.Francisco, Cde de Mayalde, Pr di Squillace, Cte di Simari, Viceroy of Peru (1577-1658); m.1602 Anna Borgia y Pignatelli, Pss di Squillace, Cdsa de Simari (d.1644)
2.5.1.Juan, Cte di Simari, d.ca 1644
2.5.2.Maria Francisca, Pss di Squillace, etc, d.1649; m.1623 her uncle, Fernando de Borja
2.5.3.Francisca maria (1611-1657); m.Juan de Castellvi y Lanza, Marques de Laconi (d.1668)
2.6.Antonio, Abbot of Oresne, d.1615
2.7.Carlos, Duque de Villahermosa (1580-1647); m.1610 Maria Luisa de Aragon y Pernstein, Duquesa de Villahermosa (d.1663)
2.7.1.Fernando Manuel, Duque de Villahermosa, etc (1613-1665); m.1st 1623 Juana Luisa de Aragon, Cdsa de Luna (d.1652); m.2d ca 1658 Maria de Silva y Corella
2.7.1.1.Manuel, Cde de Luna, d.1653; m.1650 Francisca de Borja (below; d.1693)
2.7.1.2.Carlos, Duque de Villahermosa, etc, Captain General of Catalonia (1634-1692); m.1656 Maria Enriquez de Guzman y Cordova (d.1695)
2.7.1.2.1.[illegitimate] Ursula de Borja, a nun in Saragossa, living 1695
2.7.2.Juan Maria, General of the Spanish Cavalry, b.1615, d.Milan 1661; m.Teresa Antonia de Mendoza y Cardenas, Duquesa de Najeda y de Magneda (d.1657)
2.7.2.1.[illegitimate]Carlos de Borja y de Aragon, Vscde de Miralva (1659-ca 1693); m.Antonia de Navarra y Velasco, Marquesa de Cabrega
2.7.3.Francisco Tomas, Archdeacon of Sepulveda, b.1618, d.after 28 Nov 1648
2.7.4.Juan Maria, b.1621, d.young
2.7.5.Juana del Espiritu Santo, an abbess in Madrid 1684
2.7.6.Maria de la Concepcion, a nun in Madrid 1684
2.7.7.Maria Francisca, d.young
2.7.8.Mariana, d.young
2.8.Rodrigo, d.ca 1606
2.9.Fernmando, Cde de Mayalde, Pr di Squillace, a Spanish diplomat in Italy, Viceroy and Captain General of Aragon and Valencia, d.1665; m.1623 his niece Maria Francisca, Pss de Squillace (above)
2.9.1.Francisca, Pss de Squillace, etc, d.1693; m.1st 1650 Manuel de Aragon de Gurrea y de Borja, Cde de Luna (d.1653); m.2d 1654 Francisco Idiaquez, Duque de Ciudad-Real (d.1687)
2.9.2.[illegitimate]Francisco de Borja y de Aragon, Archdeacon of Valencia, d.1685
3.Alvaro de Borja y de Aragon, Marques de Aranices (1534/5-1580); m.1564 Elvira Enriquez, Marquesa de Alcanices (1551-1596)
3.1.Antonio, Marques de Alcanices, d.1597; m.Leonor de Toledo y de Vega
3.1.1.Alvaro Antonio, Marques de Alcanices, a Spanish cavalry general (1587-1643); m.1612 Ines de Guzman y Pimentel (d.1652)
3.1.1.1.Francisco, b.and d.1612
3.1.2.Pedro, b.1593, d.after 24 Jan 1622
3.1.3.Maria, living 1594
3.2.Juan, Marques de Santiago de Oropesa (1583-1634); m.1st Juana de Aragon y Zaporta; m.2d Ana Maria de Loyola (whose mother was an Incan princess)
[by 1st m.]:
3.2.1.Anatonia, a nun in Saragossa
[by 2d m.]:
3.2.2.Juan Francisco, Marques de Santiago de Oropesa y de Alcanices (1615-1675); m.1st Ana de la Cueva y Enriquez (d.1650); m.2d ca 1651 Juana de Velasco y Guzman; m.3d Juana de Velasco (1625-1688)
3.2.2.1.Francisco Ignacio, bur 1650
3.2.2.2.Antonio, bur 1650
3.2.2.3.Ana; m.1654 Jaime de Hijar, Duque de Hijar (d.1700)
3.2.2.4.Isabel, d.ca 1675
3.2.2.5.Teresa, Marquesa de Alcanices y de Santiago de Oropesa, d.1713; m.Kuis Enriquez de Cabrera, Duque de Medina Rioseco (d.1713)
3.2.2.6.Francisca, b.1661; m.1703 Isidor de la Cueva, Marques de Bedmar
3.2.2.7.Mariana, d.1668
3.2.3.Antonio, living 1645
3.2.4.Diego, living 1628
3.2.5.Alvaro Melchior, a priest, b.1619, d.after 1641
3.2.6.Lusia, a nun in Valladolid
3.2.7.Juana, a nun in Valladolid, b.1626
3.2.8.Ines-Andrea, a nun in Valladolid
3.2.9.Francisca, d.1665; m.1664 Luis de Meneses, Marques de Penalta
3.3.Francisco, Archdeacon of Valderas, d.1596
3.4.Tomasa; m.Juan de Vega, Cde de Grajal de Campos
3.5.Ana Maria, a nun 1594
3.6.Juana, a nun 1594
3.7.Leonor, a nun 1594
4.Fernando (1537-1587); he had an illegitimate son by Violante de Armendia:
4.1.Juan de Borja, Gov and Captain General of Novo-Granada, in the Americas, bapt 1564, d.Santa Fed e Bogota 1628; m.1597 Violante Miguel de Heredia (d.1620)
4.1.1.Juan Pedro, Gov and Captain General of Popayan, b.1602, d.ca 1657; m.Tomasa de Larraspurru Vera y Mendoza (d.after 6 Sep 1640)
4.1.1.1.Juan Bauttista Francisco, a Spanish general in Peru, b.1643, d.ca 1702; m.1st ca 1687 Maria Antonia Rosa de Paz Duque de Estrada y Cornejo; m.2d Maria Ambrosia Freire y Villasis
4.1.1.1.1.Francisco Jose, bapt 1694, d.after 4 Mar 1742; m.1716 Isabel de lasteros de Salazar y Carmona (1698-ca 1742)
4.1.1.1.1.1.Francisco Javier, bapt 1724
4.1.1.1.1.2.Lucas Vicente Joaquin, b.1725, d.after 1755
4.1.1.1.1.3.Francisco Juan, b.ca 1729
4.1.1.1.1.4.Domingo Vicente Maria (1731-1784); m.1781 his niece, Maria Petronila de Uriarte y Borja (1759-1824)
4.1.1.1.1.4.1.Domingo Joaquin, b.1782, k.a.Medellin 1809
4.1.1.1.1.5.Maria del Carmen (1719-1798); m.1739 Miguel Jeronimo de Uriarte (d.1776)
4.1.1.1.1.6.Maria Ana Rosa, b.1727
4.1.1.1.1.7.Maria Manuela, b.1728
4.1.1.1.2.Francisco Antonio, d.ca 1702
4.1.1.1.3.Juana, d.ca 1702
4.1.2.Fernando
4.1.3.Francisco, Bp of Trujillo and Tucuman, bapt 1609, d.1689
4.1.4.Juana; m.1st Alvaro de Quinones; m.2d Francisco de Murga
4.1.5.Maria; m.Alonso Pacheco Maldonado
4.1.6.,7.,& 8.Diego, Maria and Ana, illegitimate children who lived in Seville
5.Alonso (1539-1593); m.1567 Leonor de Norona
6.Isabel (1532-1558); m.ca 1548 Francisco Gomez de Sandoval y Rojas, Marques de Denia
7.Juana (1535/6-1575); m.ca 1550 Juan Enriquez de Almansa y Rojas, Marques de Alcanices
8.Dorotea, a nun at Santa Clara, Gandia (1538-1552)

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